Data visualization in R - Summer Workshop

25. - 29.7.2022 09:00 - 17:00 Loket, CZECH REPUBLIC 1 450 EUR without VAT English Seats available: 19

 

Come and enjoy our "R" summer workshop by experienced professionals in one of the most beautiful towns in central Europe!

 

Introduction

R is a powerful statistical computing language, very efficient and versatile, allowing fast calculations and the display of accurate and elegant charts and tables. Also, its huge community of users support each other and almost every question you might have is already answered. R is used wherever there are data, including every scientific discipline and also industry you might think of. And that includes, of course, genomics, transcriptomics, and all the -omics that use NGS data. R users report that the benefits from learning R far outweigh the time and effort dedicated to learning it.

We present you with our workshop on NGS data visualization using R. The reason of choosing the R language is not only because its computing power, but also because it is perfect for plotting various scientific data, not only NGS. You will learn the basics of R, how to become proficient in data handling and the principles of data analysis. All this enables you to learn the power of R for data visualization, including making all the most common plots used in NGS publications, and even more.

Even though this workshop is focused on NGS data, the tools and elements taught here can be also used in other scientific disciplines, as previously mentioned.

 

During the workshop…

  • The teachers will provide lectures with hands-on exercises so the participants will consolidate and self-assess their progress in learning the course contents.
  • Workshop participants will perform all data analysis tasks themselves! One computer per participant will allow full engagement into the workshop.
  • The powerful computer infrastructure will be provided, no personal laptops are required/allowed.

Who should attend?

  • The event is intended for beginners in using the R language, or intermediate users who want to deepen their knowledge in data visualization.
  • If in doubt, do not hesitate to contact us.

What will you learn?

  • You will learn the basics of R like assigning variables, basic data types, using R as a calculator, and so on.
  • You will learn how to import data and mix different data sources.
  • You will learn how to do basic statistics with your data.
  • You will learn different kinds of plots for NGS data, including univariate to multivariate plots.
  • You will have the opportunity to communicate with an experienced team of speakers and other participants.

And what will you get?

  • At the last day of the week you will be provided with a bootable USB stick with all tools used and data analyzed
  • All your 5-day work stored and ready to be used immediately when you get back to your lab!

 

Venue and logistics

Venue: The workshop will take place in Loket, Czech Republic. This little picturesque town with about 3100 inhabitants got its name due to the town center being surrounded on three sides by the Ohře River - the shape the river takes is similar to that of an elbow (in Czech "loket"). History of this town reaches into past times. The first mention dates back to 1234 but this strategically significant place was already settled by the Slavs in about the 6th century. The stone castle comes from the second half of the 12th century as proved by its Romanesque parts.

Accommodation: Participants will be accommodated and the workshop will take place at the Hotel U Bílého Koně (White Horse Hotel). It is one of the oldest hotels in Europe built on the main square in Loket in the middle of the 16th century. The price of accommodation for 5 nights (single room) is covered by the workshop fee. It is highly recommended that participants arrive on Sunday July 24 2022. The workshop will commence on July 25 in the morning (at 9:00) and finish on July 29 in the afternoon (approx. 15:00-16:00).

Language: English

Registration fee includes: Workshop materials, half board at the Hotel U Bílého Koně, Loket, for 5 nights (July 24-29, 2022), coffee breaks, 1x joint dinner and a social event for all participants. Please kindly notice that travel and other incidental expenses are the responsibility of attendees.

 

 

Loket

Ohře river

Loket castle

Hotel U Bílého Koně

Lecture room

Coffee breaks

 

How to get there: 

Loket can be accessed easily by car, train or bus and is located close to the Czech-German border, some 145 km west of Prague.


 

Workshop agenda

Day 1 - R language for data visualization

  • Introduction to R
  • Installing packages
  • Basic data types
  • Functions and debugging
  • Data simulation
     

Day 2 - Data handling and manipulation

  • Introduction to data analysis in R
  • Tidy data and cleaning data
  • Aggregate data
  • Joining tables
  • Basic statistics
     

Day 3 - Basics of creating graphs

  • Importing data
  • Intro to GGplot2
  • Univariate graphs
  • Bar plots
  • Pie charts
  • Histograms

Day 4 - Multivariable charts

  • Bivariate graphs
  • Scatter plot
  • Biplots (MA, Vulcano, PCA…)
  • Box plots
  • Heat maps
  • Multivariate graphs
  • Time-dependent graphs
     

Day 5 -  Relationship between variables

  • Other graphs (Dendrograms, Cnet plot)
  • Statistical models
  • Interactive graphs
  • Best practices of plotting
  •  

 


 

Speakers

The team of speakers is comprised of SEQme bioinformaticians focusing on data analysis and other related tasks capable to provide a comprehensive insight into the whole data analysis workflow in context.

Resources

A basic knowledge of BASH, Unix terminal and R usage are not necessary but advantageous. If you are a newbie to the field, we recommend you go through some tutorials – please follow for example this link or this link.

 

Special offer:

All our courses and workshops can also be organized at your workplace, for your working group. So as a tailor-made event. Some of our events were even created in this way - at the client's request. The advantage of this format is, of course, the ability to prepare a turnkey event for your team, reflect your specific requirements and needs, including the ability to work with your data. If you are interested, do not hesitate to contact us.


Data visualization in R - Summer Workshop

Upcoming events:

When: 25. - 29.7.2022
Time: 09:00 - 17:00
Where: Loket, CZECH REPUBLIC
Address: Hotel U Bílého koně, T.G.Masaryka 109/53, Loket, Czech Republic
Price: 1 450 EUR without VAT
Language: English
Seats available: 19
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