Data analysis

Our experts develop customized bioinformatical services to fit your needs.

You know what you are looking for. We know how to find it.

Data analysis forms an inherent part of our Next-Generation sequencing services. Skilled bioinformaticians discuss your scientific objectives with you and analyze your data regardless of whether these were obtained in our Next-Gen sequencing lab or not. Standard analysis pipelines can also be adjusted to your needs as well as to the output of a pilot analysis we may run on your dataset.

Any application, any instrument, any scientific goal.

Methodology Standard Analysis Pipeline Specific Analysis
De novo Sequencing
  • de novo assembly
  • Variant calling (SNPs, INDELs)
  • Gene prediction
  • Gene annotation
Whole Genome Resequencing
  • Alignment and summary
  • Variant calling (SNPs, INDELs) and annotation
  • Comparative analysis
  • Structural variation (CNV) and annotation
Exome / Target Sequencing
  • Alignment and summary
  • Variant calling (SNPs, INDELs) and annotation
  • Comparative analysis
Transcriptome Resequencing
  • Expression profiles
  • Differentially expressed genes (DE)
  • Fusion genes
  • Gene set analysis
  • Variant calling and annotation
  • Comparative analysis
Transcriptome De novo Sequencing
  • de novo Assembly
  • Annotation (GO)
  • Differentially expressed genes
  • Annotation (GO), visualization
  • Variant calling and annotation
smRNA Sequencing
  • Expression profiles
  • Prediction of known and novel smRNA
  • Prediction of known and novel miRNA
  • Differentially expressed miRNA
  • Gene set analysis
  • Comparative analysis
Metagenome Sequencing
  • de novo assembly
  • Alignment and summary
  • Blastx
  • Gene prediction
  • Prediction of functionality of each gene candidate
  • Statistical analysis of two or more meta-genomic samples
Epigenome Sequencing • Global methylation profiles
  • Specific methylation profiles
  • Differentially methylated regions (DMR)
  • DMR-associated genes
  • Gene set analysis
  • Comparative analysis

Bioinformatics Fees

Our bioinformatics fees are based on short-term fee-for-services support or large-scale project support. Our fees are largely based on the amount of time required for support from our staff (per hour, day, week or month). Fees also include access to the computing infrastructure needed for successfully performing tasks given by your project. In case of interest please get in touch - based on your project requirements we will give you an estimate of the time needed / project costs.

Inquiry

Let us perform Next-Gen Seq for you!

Submit Inquiry Pricelist
© SEQme s.r.o., 2012 - 2019. All rights reserved. Disclaimer.
webdesign Beneš & Michl